NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190272_10006491

Scaffold Ga0190272_10006491


Overview

Basic Information
Taxon OID3300018429 Open in IMG/M
Scaffold IDGa0190272_10006491 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5598
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027031Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0190272_100064912F027031N/AMTDAPTQRWRTLVLWYPVLDARYGSGLARKRARRVMTREERTAVAAVIERLPATVADWSDGQATLEPFDTVEVRRPVGSLSSSGGGRWWLGPREVRPELEDVAATGTAYDSVIALWPCDPEVPQCGWGCSIGPGEATFGAGFSSISTDHWRTLATDPDPMQGYVHEWLHQVEWVYRGLGLSETDLPPLHDAAAYTSNRPPTQAPFGASYAEYHTTARTWSPWYRDWMTGRLRPADATDADAEADEPARLTQTGPIGLTPERWALREPRNT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.